Jundishapur Journal of Microbiology

Published by: Kowsar

Identification of Bacteria Associated with a Periodontal Disease in Thai Patients Based on Next-Generation Sequencing

Sunchai Payungporn 1 , * , Pratanporn Arirachakaran 2 , 3 , Witthaya Poomipak 4 , Kesmanee Praianantathavorn 1 , Georgios Charalampakis 5 and Yong Poovorawan 6
Authors Information
1 Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
2 Department of Oral Medicine, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand
3 Bangkok Medical Group, Bangkok Hospital, Bangkok, Thailand
4 Systems Biology Center, Research Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
5 Oral Microbiology and Immunology, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Sweden
6 Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
Article information
  • Jundishapur Journal of Microbiology: June 2017, 10 (6); e13646
  • Published Online: April 17, 2017
  • Article Type: Research Article
  • Received: November 28, 2016
  • Revised: February 18, 2017
  • Accepted: March 1, 2017
  • DOI: 10.5812/jjm.13646

To Cite: Payungporn S, Arirachakaran P, Poomipak W, Praianantathavorn K, Charalampakis G, et al. Identification of Bacteria Associated with a Periodontal Disease in Thai Patients Based on Next-Generation Sequencing, Jundishapur J Microbiol. 2017 ; 10(6):e13646. doi: 10.5812/jjm.13646.

Copyright © 2017, Jundishapur Journal of Microbiology. This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/) which permits copy and redistribute the material just in noncommercial usages, provided the original work is properly cited.
1. Background
2. Objectives
3. Methods
4. Results
5. Discussion
  • 1. Zaura E, Keijser BJ, Huse SM, Crielaard W. Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol. 2009; 9: 259[DOI][PubMed]
  • 2. Lipsitch M. The rise and fall of antimicrobial resistance. Trends Microbiol. 2001; 9(9): 438-44[DOI][PubMed]
  • 3. Jones KE, Patel NG, Levy MA, Storeygard A, Balk D, Gittleman JL, et al. Global trends in emerging infectious diseases. Nature. 2008; 451(7181): 990-3[DOI][PubMed]
  • 4. Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, et al. Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing. Mol Oral Microbiol. 2010; 25(6): 391-405[DOI][PubMed]
  • 5. Socransky SS, Haffajee AD. Periodontal microbial ecology. Periodontol 2000. 2005; 38: 135-87[DOI][PubMed]
  • 6. Peterson SN, Snesrud E, Liu J, Ong AC, Kilian M, Schork NJ, et al. The dental plaque microbiome in health and disease. PLoS One. 2013; 8(3)[DOI][PubMed]
  • 7. Haffajee AD, Teles RP, Socransky SS. The effect of periodontal therapy on the composition of the subgingival microbiota. Periodontol 2000. 2006; 42: 219-58[DOI][PubMed]
  • 8. Paster BJ, Olsen I, Aas JA, Dewhirst FE. The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000. 2006; 42: 80-7[DOI][PubMed]
  • 9. Tanner AC, Paster BJ, Lu SC, Kanasi E, Kent RJ, Van Dyke T, et al. Subgingival and tongue microbiota during early periodontitis. J Dent Res. 2006; 85(4): 318-23[DOI][PubMed]
  • 10. Lemos JA, Abranches J, Burne RA. Responses of cariogenic streptococci to environmental stresses. Curr Issues Mol Biol. 2005; 7(1): 95-107[PubMed]
  • 11. Bell T, Newman JA, Silverman BW, Turner SL, Lilley AK. The contribution of species richness and composition to bacterial services. Nature. 2005; 436(7054): 1157-60[DOI][PubMed]
  • 12. Ptacnik R, Solimini AG, Andersen T, Tamminen T, Brettum P, Lepisto L, et al. Diversity predicts stability and resource use efficiency in natural phytoplankton communities. Proc Natl Acad Sci U S A. 2008; 105(13): 5134-8[DOI][PubMed]
  • 13. Darveau RP. Periodontitis: a polymicrobial disruption of host homeostasis. Nat Rev Microbiol. 2010; 8(7): 481-90[DOI][PubMed]
  • 14. Teles R, Wang CY. Mechanisms involved in the association between periodontal diseases and cardiovascular disease. Oral Dis. 2011; 17(5): 450-61[DOI][PubMed]
  • 15. Ali J, Pramod K, Tahir MA, Ansari SH. Autoimmune responses in periodontal diseases. Autoimmun Rev. 2011; 10(7): 426-31[DOI][PubMed]
  • 16. Bascones-Martinez A, Matesanz-Perez P, Escribano-Bermejo M, Gonzalez-Moles MA, Bascones-Ilundain J, Meurman JH. Periodontal disease and diabetes-Review of the Literature. Med Oral Patol Oral Cir Bucal. 2011; 16(6)-9[DOI][PubMed]
  • 17. Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, et al. Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PLoS One. 2012; 7(6)[DOI][PubMed]
  • 18. Roberts A, Matthews JB, Socransky SS, Freestone PP, Williams PH, Chapple IL. Stress and the periodontal diseases: effects of catecholamines on the growth of periodontal bacteria in vitro. Oral Microbiol Immunol. 2002; 17(5): 296-303[DOI][PubMed]
  • 19. Roberts A, Matthews JB, Socransky SS, Freestone PP, Williams PH, Chapple IL. Stress and the periodontal diseases: growth responses of periodontal bacteria to Escherichia coli stress-associated autoinducer and exogenous Fe. Oral Microbiol Immunol. 2005; 20(3): 147-53[DOI][PubMed]
  • 20. Maestre JR, Bascones A, Sanchez P, Matesanz P, Aguilar L, Gimenez MJ, et al. Odontogenic bacteria in periodontal disease and resistance patterns to common antibiotics used as treatment and prophylaxis in odontology in Spain. Rev Esp Quimioter. 2007; 20(1): 61-7[PubMed]
  • 21. Wang J, Qi J, Zhao H, He S, Zhang Y, Wei S, et al. Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease. Sci Rep. 2013; 3: 1843[DOI][PubMed]
  • 22. Zambon JJ, Reynolds HS, Slots J. Black-pigmented Bacteroides spp. in the human oral cavity. Infect Immun. 1981; 32(1): 198-203[PubMed]
  • 23. Takigawa S, Sugano N, Nishihara R, Koshi R, Murai M, Yoshinuma N, et al. The effect of butyric acid on adhesion molecule expression by human gingival epithelial cells. J Periodontal Res. 2008; 43(4): 386-90[DOI][PubMed]
  • 24. Curtis MA, Zenobia C, Darveau RP. The relationship of the oral microbiotia to periodontal health and disease. Cell Host Microbe. 2011; 10(4): 302-6[DOI][PubMed]
  • 25. Slots J, Genco RJ. Black-pigmented Bacteroides species, Capnocytophaga species, and Actinobacillus actinomycetemcomitans in human periodontal disease: virulence factors in colonization, survival, and tissue destruction. J Dent Res. 1984; 63(3): 412-21[DOI][PubMed]
  • 26. Kolenbrander PE, Andersen RN, Moore LV. Coaggregation of Fusobacterium nucleatum, Selenomonas flueggei, Selenomonas infelix, Selenomonas noxia, and Selenomonas sputigena with strains from 11 genera of oral bacteria. Infect Immun. 1989; 57(10): 3194-203[PubMed]
  • 27. Hill GB, Ayers OM, Kohan AP. Characteristics and sites of infection of Eubacterium nodatum, Eubacterium timidum, Eubacterium brachy, and other asaccharolytic eubacteria. J Clin Microbiol. 1987; 25(8): 1540-5[PubMed]
  • 28. Kumar PS, Griffen AL, Moeschberger ML, Leys EJ. Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis. J Clin Microbiol. 2005; 43(8): 3944-55[DOI][PubMed]
  • 29. Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, et al. Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J Periodontol. 2009; 80(9): 1421-32[DOI][PubMed]
  • 30. Armitage GC. Development of a classification system for periodontal diseases and conditions. Ann Periodontol. 1999; 4(1): 1-6[DOI][PubMed]
  • 31. Claesson MJ, Wang Q, O'Sullivan O, Greene-Diniz R, Cole JR, Ross RP, et al. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res. 2010; 38(22)[DOI][PubMed]
  • 32. Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT. Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS One. 2012; 7(2)[DOI][PubMed]
  • 33. Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, Strausbaugh LD, et al. The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation. ISME J. 2013; 7(5): 1016-25[DOI][PubMed]
  • 34. Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, et al. Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J. 2012; 6(6): 1176-85[DOI][PubMed]
  • 35. Hajishengallis G. Immunomicrobial pathogenesis of periodontitis: keystones, pathobionts, and host response. Trends Immunol. 2014; 35(1): 3-11[DOI][PubMed]
  • 36. Hajishengallis G, Darveau RP, Curtis MA. The keystone-pathogen hypothesis. Nat Rev Microbiol. 2012; 10(10): 717-25[DOI][PubMed]
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